Yes, Paratext 9 displays specified OpenType font features, but the GUI for selecting/specifying features is broken?? (Details here... editing the feature list is available in PT Lite!)
A few years ago version 6 of the SIL fonts--Charis, Gentium, Andika, Doulos--switched from Graphite to OpenType for accessing Font Features, or "alternate glyphs." Since then Paratext's Font Features selection list works for v. 5 of any of these fonts but if your system has v. 6 the "Choose" button is greyed out, as in the screenshot.
However, I decided to check out my own Paratext project. I was surprised to see the OpenType codes for LiteracyAlternates=off and GlottalStop=large already typed into the Font Features text box, as the screenshot shows. These features are displaying correctly in my Paratext projects--in PT9 and also in PT Lite--Android and --Desktop-Linux. Surprisingly though, I can not edit the pictured feature list in PT 9, nor add feature specs into other projects. My feature choices are just "present and working" in PT9.
Paratext Lite (Beta version for Linux desktop), however, provides the easiest-to-use OpenType graphical font feature editing screen that I've seen--much better than LibreOffice! Kudos to the PTLite team!
PT9 Language Settings:
PTLite Language Settings > Edit Font Features (snippet):