Tip: You may want to try re-adding some of your terms to the project.
Method: When you identify a term that has weird versification, click the gold star (to the left) to remove the term from the project’s list. Then look up the same term in the list that it had come from (for instance, the “Major Biblical Terms” list) and then click the white star on that line item to add the term back into the list, changing the star back to gold. This should (or, may) fix the versification issue.
Explanation: As @anon291708 said (in his “EDIT”), the versification for each term in your project is set at the point that you add that term to your project. Now that the versification for your project is set to Original, terms that originate from Original-versification lists will come over with the identical versification at the point of adding the terms in.
NOTE: It may be good to jot down renderings before deleting terms from a project, just in case the new term does not register as being identical to the previous term.