I tried to replicate anon784407’s problem. When I opened a new Compare window it works OK with different projects:
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But when I change the project in an existing Compare window, PT doesn’t switch to that project. The example below should show Satawalese on the left and Tikopia on the right, but it’s showing Tikopia in both panes.
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There are also other problems when a Compare window is kept open after shutting down and reopening Paratext, or when it’s part of a layout. Sometimes the top part of the window will disappear (with the buttons, the project selection box and the version selection box).
Paulus+Kieviet