I am having a similar problem, but it was not resolved by unchecking compatibility mode.
I am running PT on Windows 10 64 bit. PT8 scrolls with TW, BART, and PT7.5, but none of these scroll with PT8. If I turn off scrolling in TW and then turn it back on again it will sync with wherever PT8 happens to be. But this is of course not much easier than navigating to the verse manually.
Thanks for any further suggestions.